Research Lines

Marine Environments
Marine Research

We are interested about the impact of environment changes (warming, deoxygenation and acidification) on marine microbial communities. Among questions, the deoxygenation of coastal systems is of primary importance. Our projects include the study of the biogeographical distribution of Hg-cycling microorganisms in the global ocean (Meta-Hg working group) and the exploration of the microbial ecology of the Baltic Sea, the Black Sea, Cariaco Basin, Norwegian fjords, Swedish fjords, Greenland fjords and Mayotte coral reefs.

Exploring fjord ecosystems and their microbial communities
Funding
2024: Research grant from SWERVE - Funding 8 days of ship time onboard R/V Svea. Project BIOX - Exploring the biogeochemistry and microbial ecology of oxygen-depleted fjords.
2024: Kempe Icelab post-doctoral fellowship. Environmental paleomicrobiology: Inferring community composition and function from metabolic fossils.
2023: Starting grant funded by the Swedish Research Council VR. Gasping for Breath: Exploring the consequences of coastal deoxygenation.
2023: Kempe post-doctoral fellowship. Effects of the deoxygenation of coastal systems on microbial metabolisms and related services.
2021: ICM Severo Ochoa post-doc fellowship. Unveiling the role of Hg-cycling microorganisms in the global ocean.
2021: Research grant funded by Swedish Research Council for Sustainable Development Formas. Methylmercury formation in coastal seas.
2020: Research grant funded by the Ecochange research program: Adapted or replaced? Understanding the freshwater-to-brackish transition of the Baltic Sea microbiome.
Lake Environments
Lake Research

We use the DNA present in the water and the sedimentary archives of lake systems to provide new knowledge about the spatial and temporal dynamics of lake microbial communities. Our BLADE project aims to use a drone to collect water samples from many Swedish lakes. Other projects include the study of microbial communities from Abisko lakes, Lake Ekoln, Lake Biwa, Chinese lakes (Sihailongwan Maar Lake, Daihai, Chenghai...), peri-alpine lakes, New Zealand lakes.

Funding
2025: Research Grant funded by Göran Gustafsson foundation. Mapping the microbial diversity in subarctic lakes with a drone-sampling environmental DNA sequencing approach.
2025: Research Grant funded by CIRC. Unraveling microbial diversity in Swedish Arctic lakes.
2023: Research grant funded by 2023 Endeavour Fund from New Zealand government. Applying a functional evidence approach to prioritise lake restoration initiatives.
2022: Research grant funded by the Swiss National Science Foundation. Deep biosphere-geosphere interactions at the top of the world (DIGESTED).
2021: Research grant funded by the Japan Society for the Promotion of Science. Development of new method for reconstructing microorganisms using sedimentary DNA.
2020: Research grant funded by the Japan Society for the Promotion of Science: Reconstruction of host and parasite during the past century in Lake Biwa.
2019: Research grant funded by Anna-Greta and Holger Crafoord's Research Grant. A key to unravel lake history from the sedimentary black box.
Other Environments
Other Environments Research

Our research extends beyond marine and freshwater systems to explore microbial communities in diverse and extreme environments. These studies help us understand the limits of life and the adaptability of microorganisms to challenging conditions. By investigating these unique ecosystems, we gain insights into fundamental microbial processes that have implications for biogeochemical cycling, climate change, and the search for life in extreme environments on Earth and beyond.